原著論文

2018

77. Miwa Ohnishi Aya Anegawa Yuko Sugiyama Kazuo Harada Akira Oikawa Yasumune Nakayama Fumio Matsuda Yukiko Nakamura Ryosuke Sasaki Chizuko Shichijo Patrick G. Hatcher Hidehiro Fukaki Shigehiko Kanaya Koh Aoki Mami Yamazaki Eiichiro Fukusaki Kazuki Saito Tetsuro Mimura (2018) Molecular components of Arabidopsis intact vacuoles clarified with metabolomic and proteomic analyses. Plant Cell Physiol.

https://doi.org/10.1093/pcp/pcy069

 

76. Kohki Shimizu, Koh Aoki* (2018) Differentiation of vascular elements in haustoria of Cuscuta japonica. Plant Signal Behav. 13:e1445935.

10.1080/15592324.2018.1445935

 

75. Kohki Shimizu, Akitaka Hozumi, Koh Aoki (2018) Organization of vascular cells in the haustorium of the parasitic flowering plant Cuscuta japonica. Plant Cell Physiol., 59:715-723.

10.1093/pcp/pcx197

 


2017

74. Minako Ekawa, Koh Aoki (2017) Phloem-conducting cells in haustoria of the root-parasitic plant Phelipanche aegyptiaca retain nuclei and are not mature sieve elements. Plants, 6: 60.

10.3390/plants6040060

 

73. Akitaka Hozumi, Subhankar Bera, Daiki Fujiwara, Takeshi Obayashi, Ryusuke Yokoyama, Kazuhiko Nishitani, Koh Aoki (2017) Arabinogalactan proteins accumulate in the cell walls of searching hyphae of the stem parasitic plants, Cuscuta campestris and Cuscuta japonica. Plant Cell Physiol., 58: 1868-1877.

10.1093/pcp/pcx121

 


2016

72. Toru Kudo, Masaaki Kobayashi, Shin Terashima, Minami Katayama, Soichi Ozaki, Maasa Kanno, Misa Saito, Koji Yokoyama, Hajime Ohyanagi, Koh Aoki, Yasutaka Kubo, Kentaro Yano (2016) TOMATOMICS: A web database for integrated omics information in tomato. Plant Cell Physiol., Database Issue, 58: e8.

https://doi.org/10.1093/pcp/pcw207

 

71. Takanobu Higashi, Koh Aoki, Atsushi J Nagano, Mie N Honjo, Hirokazu Fukuda (2016) Circadian oscillation of the lettuce transcriptome under constant light and light-dark conditions. Front. Plant Sci., 7: 1114.

10.3389./fpls.2016.01114

 

70. Virginie Garcia, Cecile Bres*, Daniel Just, Lucie Fernandez, Jean-Phillippe Mauxion, Fabienne Wong, Marie-Christine Le Paslier, Dominique Brunel, Koh Aoki, Saleh Alseekh, Alisdair R. Fernie, Paul Fraser, Christophe Rothan (2016) Rapid identification of causal mutations in tomato EMS populations via next-generation sequencing. Nat. Protoc., 11: 2401-2418.

10.1038/nprot.2016.143

 


2015

69. Koh Aoki (2015) Tomato as a model of fleshy fruit plants. Regulation of Plant Growth & Development, 50: 125-132.

https://doi.org/10.18978/jscrp.50.2_125

 

68. Ikeue D, Schudoma C, Zhang W, Ogata Y, Sakamoto T, Kurata T, Furuhashi T, Kragler F, Aoki K. (2015) A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads. Plant Methods, 11: 34.

10.1186/s13007-015-0066-6

 

67. Hajime Ohyanagi, Tomoyuki Takano, Shin Terashima, Masaaki Kobayashi, Maasa Kanno, Kyoko Morimoto, Hiromi Kanegae, Yohei Sasaki, Misa Saito, Satomi Asano, Soichi Ozaki, Toru Kudo, Koji Yokoyama, Koichiro Aya, Keita Suwabe, Go Suzuki, Koh Aoki, Yasutaka Kubo, Masao Watanabe, Makoto Matsuoka, Kentaro Yano (2015) Plant Omics Data Center: An integrated web repository for interspecies gene expression networks with NLP-based curation. Plant Cell Physiol., Database Issue, 56: e9.

10.1093/pcp/pcu188

 


2014

66. Sugimoto K, Matsui K, Iijima Y, Akakabe Y, Muramoto S, Ozawa R, Uefune M, Sasaki R, Alamgir KM, Akitake S, Nobuke T, Galis I, Aoki K, Shibata D, Takabayashi J. (2014) Intake and transformation to a glycoside of (Z)-3-hexenol from infested neighbors reveals a mode of plant odor reception and defense. Proc. Natl. Acad. Sci. USA, 111:7144-7149.

 

65. Stephan Reuscher, Masahito Akiyama, Haruko Makino, Koh Aoki, Daisuke Shibata, Katsuhiro Shiratake (2014) The sugar transporter inventory of tomato: Genome-wide identification and expression analysis. Plant Cell Physiol., 55:1123-1141.

10.1093/pcp/pcu052

 

64. Masaaki Kobayashi, Hideki Nagasaki, Virginie Garcia, Daniel Just, Cécile Bres, Jean-Philippe Mauxion, Marie-Christine Le Paslier, Dominique Brunel, Kunihiro Suda, Yohei Minakuchi, Atsushi Toyoda, Asao Fujiyama, Hiromi Toyoshima, Takayuki Suzuki, Kaori Igarashi, Christophe Rothan, Eli Kaminuma, Yasukazu Nakamura, Kentaro Yano, and Koh Aoki (2014) Genome-wide analysis of intraspecific DNA polymorphism in ‘Micro-Tom’, a model cultivar of tomato (Solanum lycopersicum). Plant Cell Physiol., 55: 445-454.

10.1093/pcp/pct181

 

63. Shimada TL, Takano Y, Shimada T, Fujiwara M, Fukao Y, Mori M, Okazaki Y, Saito K, Sasaki R, Aoki K, Hara-Nishimura I. (2014) Leaf Oil Body Functions as a Subcellular Factory for the Production of a Phytoalexin in Arabidopsis thaliana. Plant Physiol., 164(1):105-18.

10.1104/pp.113.230185

 

2013

62. Stefan Reuscher, Masahito Akiyama, Chiharu Mori, Koh Aoki, Daisuke Shibata and Katsuhiro Shiratake (2013) Genome-wide identification and expression analysis of aquaporins in tomato. PLoS One, 8:e79052.

https://doi.org/10.1371/journal.pone.0079052

 

61. YOKO IIJIMA, Ph.D.; Bunta  Watanabe; Ryosuke  Sasaki; Makiko  Takenaka; Hiroshi Ono; Nozomu  Sakurai; Naoyuki  Umemoto; Hideyuki  Suzuki; Daisuke  Shibata; Koh Aoki. (2013) Steroidal glycoalkaloid profiling and structures of glycoalkaloids in wild tomato fruit. Phytochemistry, 95: 145-157.

https://doi.org/10.1016/j.phytochem.2013.07.016

 

60. Masahiro Kato, Takahiro Kamoi, Ryosuke Sasaki, Nozomu Sakurai, Koh Aoki, Daisuke Shibata, Shinsuke Imai (2013) Structures and reactions of compounds involved in pink discolouration of onion. Food Chem., 139: 885-892.

http://dx.doi.org/10.1016/j.foodchem.2012.12.054

 

59. Hirakawa H, Shirasawa K, Ohyama A, Fukuoka H, Aoki K, Rothan C, Sato S, Isobe S, Tabata S (2013) Genome-wide SNP genotyping to infer the effects on gene functions in tomato. DNA Res., 20: 221-233.

10.1093/dnares/dst005

 

58. Koh Aoki, Yoshiyuki Ogata, Kaori Igarashi, Kentaro Yano, Hideki Nagasaki, Eli Kaminuma, Atsushi Toyoda (2013) Functional genomics of tomato in a post-genome-sequencing phase. Breeding Sci., 63: 14-20.

10.1270/jsbbs.63.14

 

57. Nozomu Sakurai, Takeshi Ara, Shigehiko Kanaya, Yukiko Nakamura, Yoko Iijima, Enomoto M, Takeshi Motegi, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata (2013) An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values. Bioinformatics, 29: 290-291.

https://doi.org/10.1093/bioinformatics/bts660

 

2012

56. Mounet F, Moing A, Kowalczyk M, Rohrmann J, Petit J, Garcia V, Maucourt M, Yano K, Deborde C, Aoki K, Bergès H, Granell A, Fernie AR, Bellini C, Rothan C, Lemaire-Chamley M (2012) Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. J. Exp. Bot., 63: 4901-4917.

10.1093/jxb/ers167

 

55. Takashi Asano, Kanae Kobayashi, Emi Kashihara, Hiroshi Sudo, Ryosuke Sasaki, Yoko Iijima, Koh Aoki, Daisuke Shibata, Kazuki Saito, Mami Yamazaki (2012) Suppression of camptothecin biosynthetic genes results in metabolic modification of secondary products in hairy roots of Ophiorrhiza pumila. Phytochemistry, 91: 128-139.

http://dx.doi.org/10.1016/j.phytochem.2012.04.019

 

54. Kenta Shirasawa, Padmalatha Koilkonda, Koh Aoki, Hideki Hirakawa, Satoshi Tabata, Manabu Watanabe, Makoto Hasegawa, Hiroyuki Kiyoshima, Shigeru Suzuki, Chikara Kuwata, Yoshiki Naito, Tsutomu Kuboyama, Akihiro Nakaya, Shigemi Sasamoto, Akiko Watanabe, Midori Kato, Kumiko Kawashima, Yoshie Kishida, Mitsuyo Kohara, Atsushi Kurabayashi, Chika Takahashi, Hisano Tsuruoka, Tsuyuko Wada and Sachiko Isobe (2012) In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut. BMC Plant Biol., 12: 80.

https://doi.org/10.1186/1471-2229-12-80

 

53. Yoichi Ogawa, Nozomu Sakurai, Akira Oikawa, Kosuke Kai,Yoshihiko Morishita, Kumiko Mori, Kanami Moriya, Fumiko Fujii, KohAoki, HideyukiSuzuki, Daisaku Ohta, Kazuki Saito, Daisuke Shibata (2012) High-throughput Cryopreservation of Plant Cell Cultures for Functional Genomics. Plant Cell Physiol., 53: 943-952.

10.1093/pcp/pcs038

 

52. Kyoko Tanase, Tadayoshi Hirai, Koh Aoki, Ken’ichi Takane, Hiroshi Ezura. (2012) Novel promoters that induce specific transgene expression during the green to ripening stages of tomato fruit development. Plant Cell Rep., 31: 1415-1424.

10.1007/s00299-012-1257-5

 

51. The Tomato Genome Consortium (TGC) (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485: 635-641.

10.1038/nature11119

 

50. Young-il Kim, Shizuka Hirai, Tsuyoshi Goto, Chie Ohyane, Haruya Takahashi, Taneaki Tsugane, Chiaki Konishi, Takashi Fujii, Shuji Inai, Yoko Iijima, Koh Aoki, Daisuke Shibata, Nobuyuki Takahashi, Teruo Kawada (2012) Potent PPARα Activator Derived from Tomato Juice, 13-oxo-9,11-Octadecadienoic Acid, Decreases Plasma and Hepatic Triglyceride in Obese Diabetic Mice. PLoS One, 7: e31317.

10.1371/journal.pone.0031317

 

49. Nobukazu Mae, Yoshio Makino, Seiichi Oshita, Yoshinori Kawagoe, Atsushi Tanaka, Koh Aoki, Atsushi Kurabayashi, Takashi Akihiro, Kazuhito Akama, Satoshi Koike, Mariko Takayama, Chiaki Matsukura, Hiroshi Ezura (2012) Accumulation mechanism of γ-aminobutyric acid in tomatoes (Solanum lycopersicum L.) under low O2 with and without CO2. J. Agric. Food Chem. 60: 1013-1019.

10.1021/jf2046812

 

2011

48. Max Itkin, Ilana Rogachev, Noam Alkan, Tally Rosenberg, Sergey Malitsky, Laura Masini, Sagit Meir, Yoko Iijima, Koh Aoki, Ric de Vos, Dov Prusky, Saul Burdman, Jules Beekwider, Asaph Aharoni (2011) GLYCOALKALOID METABOLISM 1 is Required for Steroidal Alkaloid Glycosylation and Prevention of Phytotoxicity in Tomato. Plant Cell, 23: 4507-4525.

http://dx.doi.org/10.1105/tpc.111.088732

 

47. Takeshi Saito, Tohru Ariizumi, Yoshihiro Okabe, Erika Asamizu, Kyoko Hiwasa-Tanase1, Naoya Fukuda, Tsuyoshi Mizoguchi, Yukiko Yamazaki, Koh Aoki, and Hiroshi Ezura (2011) TOMATOMA: A Novel Tomato Mutant Database Distributing Micro-Tom Mutant Collections. Plant Cell Physiol., 52: 289-296.

10.1093/pcp/pcr004

 

46. Tohru Ariizumi, Koh Aoki, Hiroshi Ezura (2011) Systematic development of tomato bioresource in Japan. Interdisciplinary Bio Central, 3: article No. 1, pp. 1-6.

10.4051/ibc.2011.3.1.0001

 

45. Anna Nakashima, Yoko Iijima, Koh Aoki, Daisuke Shibata, Koichi Sugimoto, Junji Takabayashi, and Kenji Matsui (2011) Monogalactosyl diacylglycerol is a substrate for lipoxygenase: its implications for oxylipin formation directly from lipids. Journal of Plant Interactions, 6: 93-97.

https://doi.org/10.1080/17429145.2010.544767

 

44. Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryosuke Sano, Takashi Ohno, Kenjiro Sugiyama, Atsushi Hiruta, Kiyoshi Yamazaki, Kentaro Yano, Koh Aoki, Asaph Aharoni, Kazuki Hamada, Koji Yokoyama, Shingo Kawamura, Hirofumi Otsuka, Toshiaki Tokimatsu, Minoru Kanehisa, Hideyuki Suzuki, Kazuki Saito, Daisuke Shibata (2011) KaPPA-View4: A metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Res. 39: D677-684.

10.1093/nar/gkq989

 

2010

43. Young-Il Kim, Shizuka Hirai, Haruya Takahashi, Tsuyoshi Goto, Chie Ohyane, Taneaki Tsugane, Chiaki Konishi, Takashi Fujii, Shuji Inai, Yoko Iijima, Koh Aoki, Daisuke Shibata, Nobuyuki Takahashi, Teruo Kawada (2010) 9-oxo-10(E),12(E)-octadecadienoic acid derived from tomato is a potent peroxisome proliferator-activated receptor α agonist to decrease triglyceride accumulation in mouse primary hepatocytes. Mol. Nutr. Food Res., 55: 585-593.

10.1002/mnfr.201000264

 

42. Yong-Gen Yin, T. Tomonaga, Y. Iijima, K. Aoki, D. Shibata, H. Ashihara, S. Nishimura, H. Ezura and C. Matsukura (2010) Metabolic alterations in organic acid and gamma-amino butyric acid in developing tomato (Solanum lycopersicum L.) fruits. Plant Cell Physiol., 51: 1300-1314.

10.1093/pcp/pcq090

 

41. Koh Aoki*, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura and Daisuke Shibata (2010) Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics, 11:210.  (KA and KY contributed equally.)

10.1186/1471-2164-11-210

 

40. Takumi Ogawa, Takeshi Ara, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata (2010) Transient increase in salicylic acid and its glucose conjugates after wounding in Arabidopsis leaves. Plant Biotechnol., 27: 205-209.

https://doi.org/10.5511/plantbiotechnology.27.205

 

39. Soichi Ozaki, Yoshiyuki Ogata, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Naoki Yamamoto, Yoko Iijima, Taneaki Tsugane, Takashi Fujii, Chiaki Konishi, Shuji Inai, Somnuk Bunsupa, Mami Yamazaki, Daisuke Shibata, and Koh Aoki*  (2010) Coexpression analysis of tomato genes and experimental verification of coordinated expression of genes found in a functionally enriched coexpression module. DNA Res. 17: 105-116.

10.1093/dnares/dsq002

 

2009

38. Takeshi Ara, Nozomu Sakurai, Yoshie Tange, Yoshihiko Morishita, Hideyuki Suzuki, Koh Aoki, Kazuki Saito, Daisuke Shibata (2009) Improvement of the quantitative differential metabolome pipeline for gas chromatography-mass spectrometry data by automated reliable peak selection. Plant Biotechnol., 26: 445-449.

https://doi.org/10.5511/plantbiotechnology.26.445

 

37. Yoshiyuki Ogata, Nozomu Sakurai, Hideyuki Suzuki, Koh Aoki, Kazuki Saito, Daisuke Shibata (2009) The prediction of local modular structures in a co-expression network based on gene expression datasets. Genome Informatics. 23: 117-127.

10.1142/9781848165632_0011

 

36. Yoko Iijima, Yukio Fujiwara, Takeaki Tokita, Tsuyoshi Ikeda, Toshihiro Nohara, Koh Aoki*, Daisuke Shibata (2009) Involvement of ethylene in the accumulation of esculeoside A during fruit ripening of tomato (Solanum lycopersicum). J. Agric. Food Chem., 57: 3247-3252.

10.1021/jf8037902

 

35. Kentaro Yano, Koh Aoki, Hideyuki Suzuki, Daisuke Shibata (2009) DAGViz: a directed acyclic graph browser that supports analysis of Gene Ontology annotation. Plant Biotechnol. 26: 9-13.

https://doi.org/10.5511/plantbiotechnology.26.9

 

34. Yoko Iijima, Koh Aoki* (2009) Application of metabolomics to improve tomato fruit productivity and quality. J. Japan. Soc. Hort. Sci., 78: 14-22.

https://doi.org/10.2503/jjshs1.78.14

 

33. Yoshiyuki Ogata, Nozomu Sakurai, Koh Aoki, Hideyuki Suzuki, Koei Okazaki, Kazuki Saito, Daisuke Shibata (2009) KAGIANA: An Excel-based tool for retrieving summary information on Arabidopsis genes. Plant Cell Physiol., 50: 173-177.

10.1093/pcp/pcn179

 

2008

32. Ryosuke Sano, Yoshiyuki Ogata, Hideyuki Suzuki, Yoichi Ogawa, Tomoko Dansako, Nozomu Sakurai, Koei Okazaki, Koh Aoki, Kazuki Saito, Daisuke Shibata (2008) Over-expression of transcription associated factor genes co-expressed with genes of the mevalonate pathway, upstream of isoprenoid biosynthesis, in Arabidopsis cultured cells. Plant Biotechnol., 25: 583-587.

https://doi.org/10.5511/plantbiotechnology.25.583

 

31. Ryosuke Sano, Hideyuki Suzuki, Yoichi Ogawa, Tomoko Dansako, Nozomu Sakurai, Koei Okazaki, Koh Aoki, Kazuki Saito, Daisuke Shibata (2008) Suppression of carotenoid synthesis in transgenic Arabidopsis plants over-expressing the AHL29/SOB3 gene. Plant Biotechnol., 25: 573-577.

https://doi.org/10.5511/plantbiotechnology.25.573

 

30. Takashi Akihiro, Satoshi Koike, Ryoji Tani, Takehiro Tominaga, Shin Watanabe, Yoko Iijima, Koh Aoki, Daisuke Shibata, Hiroshi Ashihara, Chiaki Matsukura, Kazuhito Akama, Tatsuhito Fujimura, Hiroshi Ezura (2008) Biochemical mechanism on GABA accumulation during fruit development in tomato. Plant Cell Physiol., 49: 1378-1389.

10.1093/pcp/pcn113

 

29. Yukiko Nakamura, Shigehiko Kanaya, Nozomu Sakurai, Yoko Iijima, Koh Aoki, Koei Okazaki, Hideyuki Suzuki, Masahiko Kitayama, Daisuke Shibata (2008) A tool for high-throughput prediction of molecular formulas and identification of isotopic peaks from large-scale mass spectrometry data. Plant Biotechnology 25: 377-380.

https://doi.org/10.5511/plantbiotechnology.25.377

 

28. Chiaki Matsukura, Koh Aoki, Naoya Fukuda, Tsuyoshi Mizoguchi, Erika Asamizu, Takeshi Saito, Daisuke Shibata, Hiroshi Ezura (2008) Comprehensive resources for tomato functional genomics based on the miniature model tomato Micro-Tom. Current Genomics, 9: .436-443.

10.2174/138920208786241225

 

27. Yoichi Ogawa, Hideyuki Suzuki, Nozomu Sakurai, Koh Aoki, Kazuki Saito and Daisuke Shibata (2008) Cryopreservation and metabolic profiling analysis of Arabidopsis T87 suspension-cultured cells. Cryo Letters, 29: 427-436.

 

26. Hideki Goda, Eriko Sasaki, Kenji Akiyama, Akiko Maruyama-Nakashita, Kazumi Nakabayashi, Weigiang Li, Mikihiro Ogawa, Yukika Yamauchi, Jeremy Preston, Koh Aoki, Takatoshi Kiba, Suguru Takatsuto, Shozo Fujioka, Tadao Asami, Takeshi Nakano, Hisashi Kato, Takeshi Mizuno, Hitoshi Sakakibara, Shinjiro Yamaguchi, Eiji Nambara, Yuji Kamiya, Hideki Takahashi, Masami Yokota Hirai, Tetsuya Sakurai, Kazuo Shinozaki, Kazuki Saito, Shigeo Yoshida, Yukihisa Shimada. (2008) The AtGenExpress hormone- and chemical-treatment data set: Experimental design, data evaluation, model data analysis, and data access. Plant J., 55: 526-542. 10.1111/j.1365-313X.2008.03510.x

 

25. Yoko Iijima, Yukiko Nakamura, Yoshiyuki Ogata, Ken’ichi Tanaka, Nozomu Sakurai, Kunihiro Suda, Tatsuya Suzuki, Hideyuki Suzuki, Koei Okazaki, Shigehiko Kanaya, Koh Aoki*, Daisuke Shibata. (2008) Metabolite annotations based on the integration of mass spectral information. Plant J., 54: 949-962. (*Corresponding author)

10.1111/j.1365-313X.2008.03434.x

 

24. Yoichi Ogawa, Tomoko Dansako, Kentaro Yano, Nozomu Sakurai, Hideyuki Suzuki, Koh Aoki, Masaaki Noji, Kazuki Saito, Daisuke Shibata (2008) Efficient and high-throughput vector construction and Agrobacterium-mediated transformation of Arabidopsis thaliana suspension-cultured cells for functional genomics. Plant Cell Physiol., 49: 242-250.

10.1093/pcp/pcm181

 

23. Yoko Iijima, Kunihiro Suda, Tatsuya Suzuki, Koh Aoki*, Daisuke Shibata (2008) Metabolite profiling of chalcones and flavanones in tomato fruit. J. Japan Soc. Hortic. Sci., 77: 94-102.

https://doi.org/10.2503/jjshs1.77.94

22. Hideyuki Suzuki, Ryosuke Sasaki, Yoshiyuki Ogata, Yukiko Nakamura, Nozomu Sakurai, Mariko Kitajima, Hiromitsu Takayama, Shigehiko Kanaya, Koh Aoki*, Daisuke Shibata, Kazuki Saito* (2008) Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Phytochemistry, 69: 99-111. (*Corresponding author)

http://dx.doi.org/10.1016/j.phytochem.2007.06.017

 

2007

21. Yukio Fujiwara, Naoko Kiyota, Masaharu Hori, Sayaka Matsushita, Yoko Iijima, Koh Aoki, Daisuke Shibata, Motohiro Takeya, Tsuyoshi Ikeda, Toshihiro Nohara, Ryoji Nagai (2007) Esculeogenin A, a New Tomato Sapogenol, Ameliorates Hyperlipidemia and Atherosclerosis in ApoE-Deficient Mice by Inhibiting ACAT. Arterioscler Thromb. Vasc. Biol. 27: 2400-2406.

10.1161/ATVBAHA.107.147405

20. Masami Yokota Hirai, Kenjiro Sugiyama, Yuji Sawada, Takayuki Tohge, Takeshi Obayashi, Akane Suzuki, Ryoichi Araki, Nozomu Sakurai, Hideyuki Suzuki, Koh Aoki, Hideki Goda, Osamu Ishizaki Nishizawa, Daisuke Shibata, Kazuki Saito (2007) Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosysnthesis. Proc. Natl. Acad. Sci. U.S.A. 104: 6478-6483.

10.1073/pnas.0611629104

 

19. Koh Aoki, Yoshiyuki Ogata, Daisuke Shibata (2007) Approaches for extracting practical information from gene coexpression networks in plant biology. Plant Cell Physiol. 48: 381-390.

10.1093/pcp/pcm013

 

18. Koh Aoki, Kentaro Yano, Nozomu Sakurai, Daisuke Shibata, Taneaki Tsugane, Manabu Watanabe, Yong-Gen Yin, Chiaki Matsukura (2007) Expression-based approach toward functional characterization of tomato genes that have no or weak similarity to Arabidopsis genes. Acta Hortic. 745: 457-464.

10.17660/ActaHortic.2007.745.31

 

17. Shin Watanabe, Tsuyoshi Mizoguchi, Koh Aoki, Yasutaka Kubo, Hitoshi Mori, Shunsuke Imanishi, Yukiko Yamazaki, Daisuke Shibata, Hiroshi Ezura (2007) Ethylmethanesulfonate (EMS) mutagenesis of Solanum lycopersicum cv. Micro-Tom for large-scale mutant screens. Plant Biotechnology, 24: 33-38.

https://doi.org/10.5511/plantbiotechnology.24.33

 

16. Toshikazu Omura, Shin Watanabe, Yoko Iijima, Koh Aoki, Daisuke Shibata, and Hiroshi Ezura (2007)  Molecular and genetic characterization of transgenic tomato expressing 3-hydroxy-3-methylglutaryl coenzyme A reductase. Plant Biotechnology, 24: 107-116.

https://doi.org/10.5511/plantbiotechnology.24.107

 

15. Kentaro Yano, Koh Aoki, Daisuke Shibata (2007) Genomic database for tomato. Plant Biotechnology 24: 17-25.

https://doi.org/10.5511/plantbiotechnology.24.17

 

2006

14. Kentaro Yano, Taneaki Tsugane, Manabu Watanabe, Fumi Maeda, Koh Aoki, Daisuke Shibata (2006) Non-biased distribution of the tomato genes that have no counterpart in Arabidopsis thaliana in expression patterns during fruit ripening. Plant Biotechnology 23: 199-202.

https://doi.org/10.5511/plantbiotechnology.23.199

 

13. KentaroYano, Manabu Watanabe, Naoki Yamamoto, Taneaki Tsugane, Koh Aoki, Nozomu Sakurai, Daisuke Shibata (2006) MiBASE:A database of a miniature tomato cultivar Micro-Tom. Plant Biotechnology 23: 195-198.

https://doi.org/10.5511/plantbiotechnology.23.195

 

2005

12. Koh Aoki, Nobuo Suzui, Shu Fujimaki, Keiko Yonekura-Sakakibara, Naoshi Dohmae, Koji Takio, Toru Fujiwara, Hiroaki Hayashi, Tomoyuki Yamaya, Hitoshi Sakakibara (2005) Destination-selective long-distance movement of phloem proteins. Plant Cell 17: 1801-1814.

http://dx.doi.org/10.1105/tpc.105.031419

 

2004

11. Takatoshi Kiba, Koh Aoki, Hitoshi Sakakibara, Takeshi Mizuno (2004) A novel class of Arabidopsis response regulator genes, the ectopic expression of which results in phenocopy of the wol cytokinin-receptor deficient mutant. Plant&Cell Physiol. 45: 1063-1077.

10.1093/pcp/pch128

10. Kentaro Takei, Nanae Ueda, Koh Aoki, Takashi Kuromori, Takashi Hirayama, Kazuo Shinozaki, Tomoyuki Yamaya, Hitoshi Sakakibara (2004) AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant & Cell Physiol. 45:1053-1062.

10.1093/pcp/pch119

 

2003

9. Matthieu Denoual, Koh Aoki, Agnes Mita-Tixier and Hiroyuki Fujita (2003) A MICROFLUIDIC DEVICE FOR LONG-TERM STUDY OF INDIVIDUAL CELLS. Micro Total Analysis System 2003, Volume 1, pp531-534, Eds, Northrup, M.A., Jensen, K.F., Jed Harrison, D. MESA monographs.

 

8. Yasuharu Asakura, Takeshi Hagino, Yukinori Ohta, Koh Aoki, Keiko Yonekura-Sakakibara, Atsushi Deji, Tomoyuki Yamaya, Tatsuo Sugiyama and Hitoshi Sakakibara (2003) Molecular characterization of His-Asp phosphorelay signaling factors in maize leaves: Implications of the signal divergence by cytokinin-inducible response regulators in the cytosol and the nuclei. Plant Mol. Biol. 52: 331-341.

10.1023/A:1023971315108

 

2002

7. Koh Aoki, Friedrich Kragler, Beatriz-Xoconostle Cazares, William J. Lucas (2002) A subclass of plant heat shock cognate 70 chaperones carries a motif that facilitates trafficking through plasmodesmata. Proc. Natl. Acad. Sci. U.S.A. 99: 16342-16347.

10.1073/pnas.252427999

 

6. Bambang Sugiharto, Netty Ermawati, Hitoshi Mori, Koh Aoki, Keiko Yonekura-Sakakibara, Tomoyuki Yamaya, Tatsuo Sugiyama, Hitoshi Sakakibara (2002) Identification and characterization of a gene encoding drought-inducible protein localizing in the bundle sheath cell of sugarcane. Plant Cell Physiol., 43: 350-354.

https://doi.org/10.1093/pcp/pcf039

 

2000

5. Byung-Chun Yoo, Koh Aoki, Yu Xiang, Leslie R. Campbell, Richard J. Hull, Beatriz-Xoconostle Cazares, Jan Monzer, Jung-Youn Lee, Diane E. Ullman, William J. Lucas (2000) Characterization of Cucurbita maxima phloem serpin-1 (CmPS-1): a develipmentally regulated elastase inhibitor. J. Biol. Chem., 275: 35122-35128.

10.1074/jbc.M006060200

 

1998

4. Koh Aoki, Miyuki Yamamoto, Keishiro Wada (1998) Photosynthetic and heterotrophic ferredoxin isoproteins are colocalized in fruit plastids of tomato. Plant Physiol., 118: 439-449.

https://doi.org/10.1104/pp.118.2.439

 

1996

3. Koh Aoki, Keishiro Wada (1996) Temporal and spatial distribution of ferredoxin isoproteins in tomato fruit. Plant Physiol., 112:651-657.

https://doi.org/10.1104/pp.112.2.651

 

1995

2. Kaeko Kamide, Harumi Sakai, Koh Aoki, Yukika Sanada, Keishiro Wada, Laura S. Green, Biohon C. Yee, Bob B. Buchanan (1995) Amino acid sequences of ferredoxin isoproteins from different organs of tomato plant (Lycopersicon esculentum Mill.). Photosynthesis Research, 46: 301-308.

https://link.springer.com/article/10.1007/BF00020444

 

1991

1. Eiki Momotani, Koh Aoki, Hideo Tsuji (1991) Effect of benzyladenine on diurnal changes in DNA content per chloroplast and chloroplast replication in intact bean leaves. J. Exp. Bot., 42: 1287-1293.

https://doi.org/10.1093/jxb/42.10.1287


著書

 

      青木 考(2015)植物工場とフィールドを繋ぐフェノミクス.  植物工場の生産性向上,コスト削減技術とビジネス構築

 

      Mireille Faurobert, Yoko Iijima, Koh Aoki* 2009, Proteomics and Metabolomics. In : Liedel, B., Slade, A., Hurst, S., Labate, J., Stommel, J.(ed) Tomato. In the series on Genomics of Fruits and Vegetable Crops. Pp403-427. Science Publishers, Enfield, New Hampshire : in press (*corresponding editor)

 

   青木 考 (2009)植物ゲノム科学辞典 総編集 駒嶺穆 編集委員 斉藤和季、田畑哲之、藤村達人、町田泰則、三位正洋 朝倉書店

 

      Koh Aoki, Yoko Iijima (2007) Metabolomics. Tomato. In: Kole C (ed) Genome Mapping and Molecular Breeding in Plants. Springer, Berlin, Heidelberg, New York: pp79-84.

 


論文

 

   青木 考 (2015) 植物工場とフィールドを繋ぐ多元的植物科学のためのフェノミクスセンター. 機能材料、20152月号 Vol.35, No.2, 54-56.

 

   青木 考、飯島陽子、柴田大輔2008)質量分析情報を総合的に活用した代謝物アノテーション法の開発 ブレインテクノニュース 915日号 12912-15.

 

   青木 考 (2006) 植物の全身を長距離移行するタンパク質とRNA 蛋白核酸酵素(共立出版) 3月号、pp237248

 

   青木 考、柴田大輔2005cDNAを活用した植物機能ゲノミクス バイオテクノロジージャーナル(羊土社)9-10月号、pp634-636.

 


招待講演

 

      Koh Aoki, Akitaka Hozumi, Kohki Shimizu, Minako Ekawa (2016) Introduction to Augmented Symplasm. 58回日本植物生理学会年会、316日-18日、鹿児島.

 

      Koh Aoki1, Nobuaki Chiba1, Hideki Hirakawa2, Kenta Shirasawa2, Hideki Nagasaki2, Sachiko Isobe2, Kentaro Yano3, Yasutaka Kubo4, Yoshinori Kanayama5, Ken Hoshikawa6, Tohru Ariizumi6, Hiroshi Ezura6 (2016) NBRP Tomato DNA Resources: update and application of Micro-Tom genome information. The 13th Japan Solanaceae Consortium JSOL2016, November 25, International Christian University, Mitaka, Tokyo.

 

      Koh Aoki, Akitaka Hozumi, Kohki Shimizu, Minako Ekawa (2016) Bioengineering of the Inter-Specific Cellular Highway. The 4th TKU-OPU Joint Symposium on Advanced Materials and Chemistry, November 20-21, 2016 | TKU, New Taipei, TAIWAN.

 

      Koh Aoki1*, Akitaka Hozumi1, Minako Ekawa1, Kohki Shimizu1, Ryusuke Yokoyama2 and Kazuhiko Nishitani2 (2016) Vascular Connection between Parasitic Plant and Host Plant. The Fourth International Conference on Plant Vascular Biology, July 19-23, Shentzhen, China.

 

      Koh Aoki, Ken Hoshikawa, Masahito Shikata, Kentaro Yano, Tohru Ariizumi, Horishi Ezura. (2016) Systematic Genomics Resources based on tomato cultivar Micro-Tom. VISCEA II - Plant Model Species: Fundamentals and Applications, February 4-5, Vienna, Austria.

 

      Masaaki Kobayashi, Hideki Nagasaki, Virginie Garcia, Daniel Just, Cécile Bres, Jean-Philippe Mauxion, Marie-Christine Le Paslier, Dominique Brunel, Kunihiro Suda, Yohei Minakuchi, Atsushi Toyoda, Asao Fujiyama, Hiromi Toyoshima, Takayuki Suzuki, Kaori Igarashi, Christophe Rothan, Eli Kaminuma, Yasukazu Nakamura, Kentaro Yano, and Koh Aoki (2013) Micro-Tom DNA polymorphism against tomato reference genome sequence. Japan Solanaceae Genomics Initiative (JSOL) 10th International Symposium on Solanaceae Genomics, November 29-30, Osaka, Japan.

 

      Koh Aoki (2012) Genome Sequence Analysis and Resources of Model Tomato Cultivar Micro-Tom. 5th AG-BIO/PERDO Graduate Conference on Agricultural Biotechnology and UT-KU joint Seminar. Kasetsart University, Thailand, December 9.

 

      Tohru Ariizumi, Takeshi Saito, Koh Aoki, Kaori Igarashi, Kentaro Yano, Hideki Nagasaki, Eli Kaminuma, Atsushi Toyoda, Naoya Fukuda, Hiroshi Ezura (2012) National BioReourse Project Tomatoresources: Micro-Tom mutants, genomesequence and full-length cDNAs. IS -MPMI Kyoto2012, Kyoto, July 30-August 2.

 

      Koh Aoki, Hideki Nagasaki, Eli Kaminuma, Atsushi Toyoda, Kunihiro Suda, Kaori Igarashi, Kentaro Yano, Tohru Ariizumi, Hiroshi Ezura (2012) Genome sequence analysis of model tomato cultivar Micro-Tom. Japan-Australia Symposium on Plant Sciences for Agriculture. January 19-20, Sapporo, Japan.

 

      Koh Aoki, Hideki Nagasaki, Shoji Tatsumoto, Yohei Minakuchi, Eli Kaminuma, Atsushi Toyoda, Kunihiro Suda, Shingo Kawamura, Kaori Igarashi, Kentaro Yano (2011) Micro-Tom genome sequencing and genome-wide identification of DNA polymorphisms with Heinz 1706. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Tohru Ariizumi, Takeshi Saito, Yoshihiro Okabe, Erika Asamizu, Kanae Niinuma, Chiaki Matsukura, Naoya Fukuda, Tsuyoshi Mizoguchi, Cecile Bres, Stephane Bernillon, Annick Moing, Christophe Rothan, Hideyuki Suzuki, Koh Aoki, Hiroshi Ezura (2011) Systematic development of Micro-Tom resources: Forward and reverse genetics tools for unreaveling the molecular mechanism for tomato fruit development. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Takeshi Saito, Tohru Ariizumi, Kanae Niinuma, Erika Asamizu, Tsuyoshi Mizoguchi, Naoya Fukuda, Chiaki Matsukura, Yukiko Yamazaki, Koh Aoki, Hiroshi Ezura. (2011) National Bioresource Project-Tomato: Development of miniature cultivar ‘Micro-Tom’ based resources and tomato mutant database “TOMATOMA”. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Masahito Akiyama, Tomohide Yasuda, Chiharu Mori, Shogo Matsumoto, Koh Aoki, Daisuke Shibata, Katsuhiro Shiratake (2011) Sugar transporter and aquaporin genes in tomato. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Taishi Nagayama, Hiroko Tsuchida, Kei Fujita, Taiki Kikuchi, Kazuki Hamada, Koji Yokoyama, Kaori Igarashi, Koh Aoki, Kentaro Yano (2011) Large-scale omics analysis and database construction in tomato. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Yoko Iijima, Ryosuke Sasaki, Makiko Takenaka, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Koh Aoki (2011) Distribution of glycoalkaloids and their compositional comparison in the fruit of wild tomato species. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      Masaharu Mizutani, Masaru Nakayasu, Shingo Urakawa, Takashi Kawasaki, Yoko Iijima, Koh Aoki, Naoyuki Umemoto, Kiyoshi Ohyama, Yukihiro Sugimoto. (2011) Exploratory studies of the metabolic genes involved in biosynthesis and metabolism of steroid glycoalkaloid alpha-tomatine in tomato. The 8th SOL and 2nd ICuGI joint conference, November 28-December 1, Kobe, Japan.

 

      青木 考2011)マイクロトムゲノム解読の進捗状況 日本ナス科ウリ科ゲノム合同国際シンポジウム 201135-6日、岡山大学創立五十周年記念館・リーセントカルチャーホテル

 

      青木 考 (2010)食品としてのトマト研究-機能性成分活用へ向けて 日本学術会議シンポジウム「植物を利用したグリーンイノベーションに向けて」、2010529日、東京・日本学術会議講堂

 

      浅水恵理香、青木 考 (2010) 51回日本植物生理学会シンポジウム「次世代モデル植物トマトを活用した研究の展開」オルガナイズ、2010318-21日、熊本

 

      青木 考 (2010)植物メタボロミクス-はじまりのおわりなのだ 千葉大学COEスタートアッププログラム「代謝変換プログラムの生体制御への応用」講演会、219日(千葉大学工学部1号棟視聴覚室)

 

21      Koh Aoki (2009) Tomato genomic resources: the SBM-derived genome sequence and a fully-sequenced full-length cDNA set. Tomato genomics workshop of EU-SOL project meeting, October 7th, Toledo, Spain.

 

22      Koh Aoki (2009) Micro-Tom functional genomics resource: full-length cDNA clones and sequence information. The 5th JSOL Tomato Workshop, March 11th, Tsukuba, Japan.

 

23      Koh Aoki (2008) Omics approaches to bioengineering of tomato. 5th France-Japan Plant Science Symposium. October 22nd, University of Tsukuba.

 

24      Koh Aoki (2008) Development of a metabolite annotation platform. Institute seminar of Plant Research International. Plant Research International, Wageningen, The Netherland, October 10th.

 

25   青木 考、飯島陽子(2008)作物の網羅的成分分析の結果報告と今後の発展方向。千葉農林総合研究センター合同セミナー、620日(千葉農林総合研究センター育種研究所、茂原)

 

26   青木 考(2006)アレイデータを利用した遺伝子発現ネットワーク解析の実際. 第10回 生命科学総合研究支援センターゲノム科学分野講演会、16日(岐阜大学、岐阜)

 

27   青木 考(2006)植物におけるタンパク質・RNAの長距離移行.252DNA研究会、516日、(有)ディー・エヌ・エー研究所(霞ヶ関ビル、東京

 

28   青木 考、西田 寛、佐々木亮介、酒井雄志、櫻井 望、鈴木秀幸、斉藤和季、柴田大輔(2006)マメ科モデル植物ミヤコグサの包括的代謝物解析 日本植物学会第70回大会 作物種子研究における新しい潮流シンポジウム 9月 熊本

 

29      Daisuke Shibata, Nozomu Sakurai, Koh Aoki, Hideyuki Suzuki, Kazuki Saito (2006) Functional identification of Arabidopsis metabolism-related genes with ‘omics approach. International 11th IUPAC International Congress of Pesticide Chemistry, Kobe, Japan, August 7

 

30      Koh Aoki (2006) Tomato full-length cDNA and other functional genomic resources. Tomato Genomics and the International Tomato Sequencing Project. First Annual Meeting of the Spanish Solanaceae Research Community. Valencia, Spain, December 19